Interested in becoming an ADAPT Certified Functional Health Coach? Enrollment is open now and closes September 30thLearn More

The Underlying Causes of Thyroid Disease

Published on


Do you see a lot of patients with thyroid disorders? The number of people suffering from thyroid disorders continues to rise each year. Read on to learn more about thyroid disorders and how to address the root cause of disease.

The American Thyroid Association estimates that 20 million Americans have some form of thyroid disease, and up to 60 percent of these people are unaware of their condition. One in eight women will develop a thyroid disorder during her lifetime (1). As of 2014, levothyroxine, a synthetic form of thyroid hormone, was the highest-selling drug in the United States (2). Most individuals who take thyroid hormone will never get off the medication.

In this article, I’ll cover the major symptoms of overactive and underactive thyroid, the conventional approach to thyroid treatment, and how addressing the underlying causes of thyroid disorders can reduce, and in many cases eliminate, the need for synthetic thyroid hormones.

What’s so Important about the Thyroid, Anyway?

Every cell in the body has receptors for thyroid hormone. It is responsible for the most basic aspects of our body’s function, impacting all major systems. Thyroid hormone directly acts on the brain, the GI tract, the cardiovascular system, bone metabolism, red blood cell metabolism, gallbladder and liver function, steroid hormone production, glucose metabolism, lipid and cholesterol metabolism, protein metabolism, and body temperature regulation (3).

The Conventional Medical Approach to Thyroid Disorders

In medicine, the key to choosing the best treatment is an accurate diagnosis. If the diagnosis isn’t correct, the treatment will be ineffective—or even cause harm. Unfortunately, misdiagnosis is common in the management of thyroid disorders. If a person visits a doctor with hypothyroid symptoms, she will simply be given replacement hormones without any further inquiry into the cause of her condition. Even worse, if she has hypothyroid symptoms but her lab tests are normal, she’ll be told that she’s “fine.” If the patient insists that she’s not “fine,” she might be sent home with an antidepressant, but with no further clue about the cause of her symptoms.

The problem with this approach is that thyroid physiology is complex. The production, conversion, and uptake of thyroid hormone in the body involve several steps (4). A malfunction in any of these steps can cause hypothyroid symptoms but may not show up on standard lab tests. It is incorrect (and even negligent) to assume that all cases of hypothyroidism share the same cause and require the same treatment, yet that is exactly what the standard of care for hypothyroidism delivers.

Conventional medicine is almost exclusively oriented toward “disease management”: using drugs or surgery to suppress symptoms. In functional medicine, we focus on addressing the underlying cause of disease so that patients can get well and stay well without unnecessary drugs or surgery. Although a prescription for thyroid hormone replacement is sometimes necessary, the first step should always be to determine why the thyroid is malfunctioning in the first place. Sometimes addressing the underlying cause of the thyroid problem is enough to resolve it without resorting to thyroid hormone replacement.

Many conventionally trained clinicians will simply run a TSH test and call it a day. However, this misses critical information you need about your patient’s thyroid metabolism. I always order a combination of thyroid markers, including TSH, T3, T4, free T3, free T4, and thyroid antibodies.

The Underlying Causes of Thyroid Disorders

The two major causes of thyroid disorders are nutrient deficiency and autoimmune disease.

Iodine is a crucial nutrient for thyroid function. Thyroid hormone is rich in iodine, and deficiency of iodine can cause both hypothyroidism and goiter (a swelling of the thyroid gland) (5). Zinc is required for the synthesis of thyroid hormone, and deficiency of zinc has been shown to result in hypothyroidism (6). Selenium, a cofactor for iodothyronine deiodinase, is required to convert T4 (the inactive form of thyroid hormone) into T3 (the active form of thyroid hormone). Selenium deficiency exacerbates conditions caused by inadequate iodine intake (7).

The most common autoimmune cause of thyroid problems is Hashimoto’s disease. In Hashimoto’s disease, the body attacks the thyroid gland, progressively destroying its capacity to produce thyroid hormone and resulting in hypothyroidism (8). Some studies suggest that up to 90 percent of people with hypothyroidism have Hashimoto’s disease (9). Graves’ disease is another autoimmune disease that affects the thyroid gland, but it causes the thyroid to become enlarged and overactive, which results in hyperthyroid symptoms (10).

You can figure out if your patient’s thyroid issues are due to an autoimmune process by testing for thyroid antibodies (thyroglobulin and thyroid peroxidase antibodies). While not all people with Hashimoto’s have hypothyroid symptoms, thyroid antibodies have been found to be a marker for future thyroid disease (9).

(It’s important to note that up to 30 percent of patients with Hashimoto’s do not test positive for thyroglobulin or thyroid peroxidase antibodies. In those cases, a thyroid ultrasound test may be needed to confirm the diagnosis.)

Strategies for Improving Thyroid Function

With all of this in mind, let’s look at dietary, lifestyle, and supplement strategies for addressing nutrient deficiency and autoimmunity, the two primary causes of thyroid disorders.

Dietary considerations:

  • Avoid high amounts of goitrogens, which increase the need for iodine and damage the thyroid gland
  • Consume adequate dietary iodine and selenium
  • Avoid foods that potentially trigger an autoimmune response
  • Avoid very-low-carb diets, which can decrease thyroid function. (Note: this is a general rule and may not apply to all patients. Experimentation is often necessary.)

Lifestyle changes:

  • Manage stress: chronic stress impairs thyroid function at many different levels (11, 12)
  • Heal the gut: 80 percent of the immune system resides in the gut, and gut bacteria assist in converting T4 into T3 (13)
  • Get some sun: sun exposure has been shown to be protective against autoimmune disease (14)


  • Iodine and selenium: most optimal to get from food, but in cases of significant deficiency, supplementation may be necessary
  • Vitamin D: supplementation is required when sun exposure is not sufficient to achieve adequate levels


  1. I have experience (27 years) treating hundreds of patients with thyroid disease and I agree with your approach. However, I have found that the vast majority of patients with TSH over 5 and classic symptoms of hypothyroidism will need thyroid replacement therapy. I have not found elimination diets, glandular extracts, nutritional protocols or lifestyle changes in general to correct the deficiency of T3 in these cases. In addition, I have found an elevated reverse T3 to be an extremely rare finding! Thanks for all of your educational content.

    • Wireless technology. i.e. Cell phones, cordless phones, wifi, cell towers, smart meters… ect… all those are the cause of thyroid disorders on the rise.. the electromagnetic radiation from the wireless microwaves… Going through our bodies.

  2. Rather than avoiding cruciferous vegetables (which, I think, are a good source of sulphur and minerals), would it not be better to eat more iodine-rich foods? Chris, would you please be willing to post mechanism of action for how goitrogens damage the thyroid gland and increase the need for iodine? I would very much appreciate it. Thank you.

  3. I agree with all of your statements and would add that in order to treat thyroid you have to appreciate the role of stress and other hormone imbalances in the body. Adrenal hormones and sex hoones influence thyroid function and are affected by thyroid function.

  4. Thank you for this general framework. Currently, I’m just an RN working in community health/primary care. It is true that while a significant percentage of our patients are being prescribed levothyroxine, the providers think NOTHING about cause! I’m friendly with some of the providers, and one in particular knows (to an extent, I really try to keep quiet about it as I’m new) that I’m much more integrative-minded. The other day, one of the providers that I’m close with actually made a jab at me that “you probably think I should be checking things like free T3 ad T4!” The comment was really condescending and she laughed like it was a ridiculous notion.

    I will be starting a psychiatric/mental health Nurse Practitioner program in May. I can’t wait to finish that so that I can complete your program and begin treating patients using functional medicine and ancestral nutrition. Chris, to say that you are an inspiration to me would be a MASSIVE understatement. THANK YOU FOR EVERYTHING YOU DO.

    P.S. I want to end up in California, and it’s truly my dream to work with you on your practice! A guy can dream, right?! HAPPY NEW YEAR!

    • I truly, truly, believe the cause to be WIRELESS TECHNOLOGY!!!! I am super aware of things and how they affect me, and recently after getting a new iphone and ipad and macbook I started with headaches then hives then when turning the cell phone on a zombifying pressure on my thyroid!!!! Now I dont use cell phone or wifi… everything is WIRED now… When I go out into town is when the intense pressure on my thyroid starts again! And always when I am near cell phone towers, and wifi.

  5. thanks for your work and publication…

    Please consider the following regarding thyroid health…
    looking at the electrical body, the glands seem to act as capacitors and collects a charge, if the charge is not discharged, the gland and surrounding organs become diseased over time….once the gland and its connnected glands discharge, the balance will return, especially evident in the thyroid, adrenal and amygdala triumverate.

    The software included in the human operating system includes the autonomic response which is designed to release charges.

    thank you

  6. Can you provide more info on the link between gene SNPs and autoimmune thyroid disease.

    I am also curious about what to do if avoiding goitrogenic foods but have MTHFR C677T and COMT so need to get as much raw leafy greens as possible.

    I have also been diagnosed with pyrolurea is this something that you recognise. It was suggested that the B6 and Zinc deficiency that it causes could also be a root cause of my Hashimoto’s.

    Any help or signposting on these matters would be much appreciated.

  7. Hi, my husband is suffering from hyperthyroidism from past 1 yr and he is taking pills levothyroxine 0.05mg but still the lab tests shows it’s increasing don’t know y

    • Because the environment is increasing wireless technology. I only get pressure on my thyroid when i the midst of wireless tech, cell towers,. wifi, cell phones, cordless phones.

  8. Hi, thank you for the info! I have recently been diagnosed with Hashimoto’s. My doctor doesn’t seem to know how to treat my Hashimoto, neither does my Endo chronologist. I looked into a functional doctor in my area, and have been unsuccessful in my attempts. Seems as though I have not been able to find a doctor in my area that knows how to manage my Hashimoto. What would be your recommendation for finding a doctor in my area that could help me heal from this Hashimoto disease? I’m really desperate at this point. I have had two surgeries in the last three months. My gallbladder removed, also hysterectomy, miscarriages, a ton of different Gastro problems including pancreatitis,gastroenteritis, stomach infections, goiter and many other hormonal issues.
    If you have any recommendations it would be greatly appreciated thanks again!

  9. After you start taking selenium and iodine how long will it be6before you see a difference, whereas you can start to lose weight or regulate correctly. Any foods in particular I can get these minerals in? The weight doctor said under the LARS test the level was 45.

  10. I started to get pressure on my thyroid when I got my first iphone… now I am sensitive to cell towers and any cell phone that is on and active… I always get a pressure on my thyroid when I go out in public now, I have turned off wifi and bought ethernet for internet, use a landline with cord… NOTHING WIRELESS…. The wireless waves that are being used are disrupting thyroid function… I just was at a store today next to 3 cell phone towers and 2 of the ladies that work there were recently diagnosed to take thyroid meds, one never had this issue until leaving India to here in U.S.